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  5. Cre13.g566700

Cre13.g566700


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2B snRNP component


Gene families : OG0003415 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g566700
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00183440 U1A,... RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
AT2G47580 U1A spliceosomal protein U1A 0.04 OrthoFinder output from all 47 species
Adi_g006853 No alias component *(U2B) of U2 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g059478 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085490 No alias component *(U2B) of U2 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g03702 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.87 No alias U2 small nuclear ribonucleoprotein B OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.24 U2B'' RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
LOC_Os03g18720.1 LOC_Os03g18720 protein factor U2B of U2 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
MA_10129927g0010 U1A U1 small nuclear ribonucleoprotein A OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Mp5g12580.1 No alias component U1A of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009014 No alias component *(U2B) of U2 snRNP complex & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0135.g022362 No alias component *(U2B) of U2 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e031154_P002 U1A, Zm00001e031154 component U1A of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 80
IPR000504 RRM_dom 152 211
No external refs found!