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  5. Cre12.g557950

Cre12.g557950


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SPF31 pre-mRNA splicing factor


Gene families : OG0006204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g557950

Target Alias Description ECC score Gene Family Method Actions
Als_g04715 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g37659 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34174.t1 Aspi01Gene34174 pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34177.t1 Aspi01Gene34177 pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g01304 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g00789 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species
MA_927750g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp7g14760.1 No alias pre-mRNA splicing factor (SPF31) 0.03 OrthoFinder output from all 47 species
Spa_g30629 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 70 128
No external refs found!