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  5. Cre12.g543450

Cre12.g543450


Description : Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB ligase E3 activities.RUB ligase E3 protein (RBX1)


Gene families : OG0002121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g543450
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00244120 HRT1, ATRBX1,... Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT5G20570 HRT1, ATRBX1, RBX1, ROC1 RING-box 1 0.06 OrthoFinder output from all 47 species
Azfi_s0102.g044477 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.01 OrthoFinder output from all 47 species
Cba_g53484 HRT1, ATRBX1, RBX1, ROC1 core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.7 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.09 OrthoFinder output from all 47 species
GSVIVT01016736001 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.01 OrthoFinder output from all 47 species
LOC_Os02g47870.1 LOC_Os02g47870 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.02 OrthoFinder output from all 47 species
Lfl_g29347 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.01 OrthoFinder output from all 47 species
Mp4g09120.1 HRT1, ATRBX1, RBX1, ROC1 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.02 OrthoFinder output from all 47 species
Msp_g38198 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.05 OrthoFinder output from all 47 species
Pir_g01085 HRT1, ATRBX1, RBX1, ROC1 core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0082.g018104 HRT1, ATRBX1, RBX1, ROC1 core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.01 OrthoFinder output from all 47 species
Sam_g19669 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Zm00001e017143_P001 Zm00001e017143 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.04 OrthoFinder output from all 47 species
Zm00001e023339_P001 Zm00001e023339 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.01 OrthoFinder output from all 47 species
Zm00001e025643_P003 Zm00001e025643 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 50 109
No external refs found!