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  5. Cre12.g538500

Cre12.g538500


No description available


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g538500
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00144740 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AT1G15420 No alias CONTAINS InterPro DOMAIN/s: Small-subunit processome,... 0.02 OrthoFinder output from all 47 species
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.18 OrthoFinder output from all 47 species
Aev_g13801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11203 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene62302.t1 Aspi01Gene62302 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0028.g024031 No alias not classified & original description: CDS=168-2150 0.08 OrthoFinder output from all 47 species
Cba_g03965 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.1Z072200.1 Ceric.1Z072200 not classified & original description: pacid=50586493... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.17 OrthoFinder output from all 47 species
Ehy_g02665 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01017246001 No alias No description available 0.19 OrthoFinder output from all 47 species
GSVIVT01035079001 No alias No description available 0.13 OrthoFinder output from all 47 species
Gb_29253 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g46060.1 LOC_Os01g46060 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os03g18840.1 LOC_Os03g18840 no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
Len_g55550 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10435957g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp5g00060.1 No alias no hits & (original description: none) 0.21 OrthoFinder output from all 47 species
Msp_g11307 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g01303 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g17083 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g13559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_70V3.1 Pp3c7_70 transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Ppi_g09282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009705 No alias not classified & original description: CDS=1-1959 0.01 OrthoFinder output from all 47 species
Sam_g36919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo404454 No alias No description available 0.12 OrthoFinder output from all 47 species
Solyc02g030080.4.1 Solyc02g030080 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc03g116380.4.1 Solyc03g116380 no hits & (original description: none) 0.24 OrthoFinder output from all 47 species
Tin_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001372_P001 Zm00001e001372 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Zm00001e032317_P004 Zm00001e032317 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 532 635
No external refs found!