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  5. Cre12.g533050

Cre12.g533050


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG1/NSN1 regulatory GTPase


Gene families : OG0005439 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g533050
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00118420 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AT3G07050 No alias GTP-binding family protein 0.18 OrthoFinder output from all 47 species
Ala_g30003 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.01 OrthoFinder output from all 47 species
Als_g01808 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.01 OrthoFinder output from all 47 species
Azfi_s0011.g012682 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.1 OrthoFinder output from all 47 species
Cba_g02565 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.01 OrthoFinder output from all 47 species
Ceric.24G062000.1 Ceric.24G062000 regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.14 No alias Guanine nucleotide-binding protein-like NSN1... 0.01 OrthoFinder output from all 47 species
GSVIVT01028584001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Gb_31371 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.07 OrthoFinder output from all 47 species
LOC_Os01g27730.1 LOC_Os01g27730 NUG1/NSN1 LSU processome regulatory GTPase 0.2 OrthoFinder output from all 47 species
Len_g15925 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.01 OrthoFinder output from all 47 species
MA_19380g0010 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Mp8g17210.1 No alias NUG1/NSN1 LSU processome regulatory GTPase 0.15 OrthoFinder output from all 47 species
Ore_g18478 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.05 OrthoFinder output from all 47 species
Pnu_g09621 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.01 OrthoFinder output from all 47 species
Pp3c12_9000V3.1 Pp3c12_9000 GTP-binding family protein 0.05 OrthoFinder output from all 47 species
Pp3c16_1080V3.1 Pp3c16_1080 GTP-binding family protein 0.04 OrthoFinder output from all 47 species
Ppi_g40488 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002421 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.01 OrthoFinder output from all 47 species
Sam_g19575 No alias regulatory GTPase (NUG1/NSN1) of LSU processome &... 0.03 OrthoFinder output from all 47 species
Solyc06g083520.3.1 Solyc06g083520 NUG1/NSN1 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species
Solyc09g061430.3.1 Solyc09g061430 NUG1/NSN1 LSU processome regulatory GTPase 0.17 OrthoFinder output from all 47 species
Zm00001e004937_P002 Zm00001e004937 NUG1/NSN1 LSU processome regulatory GTPase 0.19 OrthoFinder output from all 47 species
Zm00001e012467_P001 Zm00001e012467 NUG1/NSN1 LSU processome regulatory GTPase 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014813 Gnl3_N_dom 16 94
IPR006073 GTP-bd 300 370
No external refs found!