Cre12.g529500

No description available

Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g529500
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00229900	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
AMTR_s00018p00145570	evm_27.TU.AmTr_v1...	No description available	0.01	OrthoFinder output from all 47 species
AT4G25730	No alias	FtsJ-like methyltransferase family protein	0.25	OrthoFinder output from all 47 species
Adi_g084654	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g14193	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22298	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09617	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0003.g007467	No alias	MRM2-type rRNA methyltransferase & original description:...	0.13	OrthoFinder output from all 47 species
Cba_g66001	No alias	MRM2-type rRNA methyltransferase & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.33G005200.1	Ceric.33G005200	MRM2-type rRNA methyltransferase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.16	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g07280	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01023801001	No alias	No description available	0.16	OrthoFinder output from all 47 species
LOC_Os05g49230.1	LOC_Os05g49230	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
Lfl_g02148	No alias	MRM2-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429557g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_158214g0010	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Mp8g14990.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Pir_g36296	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15947	No alias	MRM2-type rRNA methyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g41491	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Smo141188	No alias	No description available	0.02	OrthoFinder output from all 47 species
Smo404107	No alias	No description available	0.07	OrthoFinder output from all 47 species
Smo78506	No alias	No description available	0.02	OrthoFinder output from all 47 species
Solyc11g020810.2.1	Solyc11g020810	no hits & (original description: none)	0.19	OrthoFinder output from all 47 species
Solyc11g020820.2.1	Solyc11g020820	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Tin_g15529	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e026556_P001	Zm00001e026556	no hits & (original description: none)	0.13	OrthoFinder output from all 47 species
Zm00001e032456_P001	Zm00001e032456	no hits & (original description: none)	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002877	RNA_MeTrfase_FtsJ_dom	23	199
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	237	418
IPR012920	rRNA_MeTfrase_SPB1-like_C	678	878

External Links

No external refs found!

Cre12.g529500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation