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  5. Cre12.g528950

Cre12.g528950 (APUM24, PUM24)


Aliases : APUM24, PUM24

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS2 rRNA removal.APUM24 rRNA processing factor


Gene families : OG0004290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g528950
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00139120 APUM24, PUM24,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AT3G16810 APUM24, PUM24 pumilio 24 0.18 OrthoFinder output from all 47 species
Adi_g010373 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Ala_g22344 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Als_g33028 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Aop_g00729 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Azfi_s0444.g070601 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.01 OrthoFinder output from all 47 species
Ceric.08G042900.1 APUM24, PUM24,... rRNA processing factor involved in ITS2 rRNA removal... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.61 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Dac_g10024 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Dcu_g01831 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.06 OrthoFinder output from all 47 species
GSVIVT01035090001 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Gb_02879 APUM24, PUM24 APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.07 OrthoFinder output from all 47 species
LOC_Os03g61560.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.12 OrthoFinder output from all 47 species
Lfl_g18003 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
MA_10137141g0010 APUM24, PUM24 Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_80959g0020 APUM24, PUM24 Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9586059g0010 APUM24, PUM24 Pumilio homolog 24 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Mp7g01710.1 APUM24, PUM24 APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.15 OrthoFinder output from all 47 species
Ore_g19282 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.06 OrthoFinder output from all 47 species
Pir_g12537 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Ppi_g09487 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0195.g025480 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Sam_g40242 No alias rRNA processing factor involved in ITS2 rRNA removal... 0.05 OrthoFinder output from all 47 species
Solyc01g065580.4.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.18 OrthoFinder output from all 47 species
Spa_g12081 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Zm00001e006271_P002 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 113 144
No external refs found!