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  5. Cre12.g513701

Cre12.g513701


Description : DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica


Gene families : OG0005062 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005062_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g513701
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT1G77030 No alias hydrolases, acting on acid anhydrides, in... 0.15 OrthoFinder output from all 47 species
Als_g10873 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g04440 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0006.g009755 No alias not classified & original description: CDS=181-2391 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.32 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 OrthoFinder output from all 47 species
Dcu_g01892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06026 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g10445 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01009983001 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.09 OrthoFinder output from all 47 species
Gb_13284 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 OrthoFinder output from all 47 species
LOC_Os08g32090.1 LOC_Os08g32090 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Len_g36646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04227 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_104828g0010 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.01 OrthoFinder output from all 47 species
Mp7g18590.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.1 OrthoFinder output from all 47 species
Ore_g07361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09876 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c14_6810V3.1 Pp3c14_6810 hydrolases, acting on acid anhydrides, in... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0134.g022304 No alias not classified & original description: CDS=86-2512 0.02 OrthoFinder output from all 47 species
Sam_g38504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo165331 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.04 OrthoFinder output from all 47 species
Smo438217 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.04 OrthoFinder output from all 47 species
Solyc10g009070.3.1 Solyc10g009070 Putative DEAD-box ATP-dependent RNA helicase 29... 0.06 OrthoFinder output from all 47 species
Zm00001e022381_P001 Zm00001e022381 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012541 DBP10_C 755 819
IPR001650 Helicase_C 274 384
IPR011545 DEAD/DEAH_box_helicase_dom 70 237
No external refs found!