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  5. Cre12.g505200

Cre12.g505200


Description : DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g505200
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.07 OrthoFinder output from all 47 species
Aop_g10027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037272 No alias not classified & original description: CDS=107-1516 0.02 OrthoFinder output from all 47 species
Azfi_s0215.g058400 AtRH36, SWA3, RH36 not classified & original description: CDS=74-1108 0.03 OrthoFinder output from all 47 species
Cba_g10042 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.20 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021122.18 AtRH36, SWA3, RH36 DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g04191 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Gb_23737 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.01 OrthoFinder output from all 47 species
LOC_Os03g46610.1 LOC_Os03g46610 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os07g43980.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species
Lfl_g08155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_8567568g0010 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g19410.1 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.02 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g09085 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g42503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25754 No alias SSU processome assembly factor *(SWA3) & original... 0.01 OrthoFinder output from all 47 species
Solyc10g005520.3.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.02 OrthoFinder output from all 47 species
Solyc10g007550.3.1 Solyc10g007550 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g08077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013281_P004 Zm00001e013281 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e035639_P002 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 248 351
IPR011545 DEAD/DEAH_box_helicase_dom 42 208
No external refs found!