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  5. Cre12.g490150

Cre12.g490150 (RecQl3, ATRECQ3)


Aliases : RecQl3, ATRECQ3

Description : ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana


Gene families : OG0007173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g490150
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00186260 ATRECQ4A,... ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Azfi_s0004.g008369 MED34, ATRECQ2, RECQL2 not classified & original description: CDS=95-2653 0.02 OrthoFinder output from all 47 species
Ceric.18G010900.1 MED34, ATRECQ2,... not classified & original description: pacid=50621519... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.28 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os07g48360.1 MED34, ATRECQ2,... Mediator of RNA polymerase II transcription subunit 34... 0.03 OrthoFinder output from all 47 species
Len_g20646 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427638g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10429752g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ppi_g56051 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06135 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e035873_P003 MED34, ATRECQ2,... ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 57 214
IPR002121 HRDC_dom 603 668
IPR001650 Helicase_C 271 366
IPR032284 RecQ_Zn-bd 379 444
IPR018982 RQC_domain 454 562
No external refs found!