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  5. Cre10.g466550

Cre10.g466550


Description : RNA biosynthesis.transcriptional activation.BSD transcription factor


Gene families : OG0004762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g466550

Target Alias Description ECC score Gene Family Method Actions
Ala_g14658 No alias component *(TFB1) of TFIIh basal transcription factor... 0.01 OrthoFinder output from all 47 species
Ceric.22G065100.1 Ceric.22G065100 component *(TFB1) of TFIIh basal transcription factor... 0.01 OrthoFinder output from all 47 species
LOC_Os08g25060.1 LOC_Os08g25060 subunit TFB1 of multifunctional TFIIh complex. component... 0.01 OrthoFinder output from all 47 species
Lfl_g05551 No alias component *(TFB1) of TFIIh basal transcription factor... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008248 No alias component *(TFB1) of TFIIh basal transcription factor... 0.01 OrthoFinder output from all 47 species
Solyc10g005900.3.1 Solyc10g005900 subunit TFB1 of multifunctional TFIIh complex. component... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
InterPro domains Description Start Stop
IPR005607 BSD_dom 220 262
No external refs found!