Cre10.g462700

Description : RNA processing.RNA 3-end polyadenylation.Cleavage Factor I (CF-Im) complex.CPFS5/CFIm25 component

Gene families : OG0003646 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003646_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre10.g462700

Target	Alias	Description	ECC score	Gene Family Method
AT4G25550	No alias	Cleavage/polyadenylation specificity factor, 25kDa subunit	0.03	OrthoFinder output from all 47 species
Cba_g02385	No alias	component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)...	0.03	OrthoFinder output from all 47 species
Gb_00296	No alias	component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex	0.01	OrthoFinder output from all 47 species
LOC_Os04g58640.1	LOC_Os04g58640	component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex	0.02	OrthoFinder output from all 47 species
MA_95508g0010	No alias	component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex	0.02	OrthoFinder output from all 47 species
Mp8g17730.1	No alias	component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex	0.01	OrthoFinder output from all 47 species
Msp_g07679	No alias	component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)...	0.01	OrthoFinder output from all 47 species
Ore_g09075	No alias	component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020528	No alias	component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im)...	0.01	OrthoFinder output from all 47 species
Solyc01g009630.3.1	Solyc01g009630	component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005849	mRNA cleavage factor complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006378	mRNA polyadenylation	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043631	RNA polyadenylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016706	Cleav_polyA_spec_factor_su5	9	194

External Links

No external refs found!

Cre10.g462700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation