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  5. Cre10.g456800

Cre10.g456800


Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0003135 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003135_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g456800
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT4G16810 No alias VEFS-Box of polycomb protein 0.02 OrthoFinder output from all 47 species
AT5G51230 AtEMF2, EMF2, VEF2, CYR1 VEFS-Box of polycomb protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene61619.t1 AtEMF2, EMF2,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.35G053800.1 AtEMF2, EMF2,... component *(EMF2/VRN2/FIS2) of PRC2 histone methylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01004791001 AtEMF2, EMF2, VEF2, CYR1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 OrthoFinder output from all 47 species
Lfl_g09321 AtEMF2, EMF2, VEF2, CYR1 component *(EMF2/VRN2/FIS2) of PRC2 histone methylation... 0.02 OrthoFinder output from all 47 species
MA_259130g0010 No alias C2H2 zinc finger transcription factor 0.01 OrthoFinder output from all 47 species
Ore_g17342 AtEMF2, EMF2, VEF2, CYR1 component *(EMF2/VRN2/FIS2) of PRC2 histone methylation... 0.01 OrthoFinder output from all 47 species
Ore_g17343 AtEMF2, EMF2, VEF2, CYR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005699_P001 AtEMF2, EMF2,... component EMF2|VRN2|FIS2 of VRN/FIS/EMF core complexes.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019135 Polycomb_protein_VEFS-Box 916 1040
No external refs found!