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  5. Cre10.g448700

Cre10.g448700


Description : Chromatin organisation.chromatin remodeling complexes.additional core components.BAF60 component


Gene families : OG0004548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g448700

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0112.g045812 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Dcu_g08168 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Nbi_g02153 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pir_g13479 CHC1 SMARCD component *(SWP73) of chromatin remodeling... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 376 445
No external refs found!