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  5. Cre10.g442000

Cre10.g442000


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor


Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g442000
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT4G28200 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.14 OrthoFinder output from all 47 species
Azfi_s2889.g113567 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Ceric.34G074700.1 Ceric.34G074700 SSU processome assembly factor *(UTP6) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000571.29 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder output from all 47 species
Dac_g12497 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g03852 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012705001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Gb_01417 No alias SSU processome assembly factor (UTP6) 0.01 OrthoFinder output from all 47 species
LOC_Os02g01350.1 LOC_Os02g01350 SSU processome assembly factor (UTP6) 0.1 OrthoFinder output from all 47 species
MA_10435952g0010 No alias SSU processome assembly factor (UTP6) 0.04 OrthoFinder output from all 47 species
Mp7g18520.1 No alias SSU processome assembly factor (UTP6) 0.17 OrthoFinder output from all 47 species
Pir_g09702 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009974 No alias chloroplast import factor *(PRAT1) & original... 0.05 OrthoFinder output from all 47 species
Sam_g15790 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Sam_g29993 No alias SSU processome assembly factor *(UTP6) & original... 0.03 OrthoFinder output from all 47 species
Tin_g02822 No alias SSU processome assembly factor *(UTP6) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e011580_P001 Zm00001e011580 SSU processome assembly factor (UTP6) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013949 Utp6 9 91
No external refs found!