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  5. Cre10.g441200

Cre10.g441200


Description : RNA processing.RNA decay.deadenylation-dependent mechanism.LARP1 XRN4-exoribonuclease cofactor


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g441200

Target Alias Description ECC score Gene Family Method Actions
AT5G66100 No alias winged-helix DNA-binding transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g020044 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g087231 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.01 OrthoFinder output from all 47 species
Aev_g38233 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g14550 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene43162.t1 Aspi01Gene43162 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62010.t1 Aspi01Gene62010 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.93 No alias No description available 0.05 OrthoFinder output from all 47 species
Dac_g07463 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g26113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01037494001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
LOC_Os01g16110.1 LOC_Os01g16110 XRN4-exoribonuclease cofactor (LARP1) 0.01 OrthoFinder output from all 47 species
Lfl_g07864 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
MA_114481g0010 No alias La-related protein 1B OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_175718g0010 No alias XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g15860.1 No alias XRN4-exoribonuclease cofactor (LARP1) 0.04 OrthoFinder output from all 47 species
Msp_g26140 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g19204 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g19994 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g13014 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Spa_g39508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 423 478
No external refs found!