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  5. Cre10.g427700

Cre10.g427700


Description : DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g427700

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0333.g065464 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.5 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g19139 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Dde_g17271 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Len_g15688 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Mp2g08020.1 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Msp_g08556 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.01 OrthoFinder output from all 47 species
Ppi_g29242 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Spa_g56774 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Tin_g14052 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.01 OrthoFinder output from all 47 species
Zm00001e011396_P001 Zm00001e011396 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 401 509
IPR011545 DEAD/DEAH_box_helicase_dom 185 366
No external refs found!