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  5. Cre10.g420900

Cre10.g420900


Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g420900
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00103870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT4G16630 No alias DEA(D/H)-box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Aev_g14343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene71775.t1 Aspi01Gene71775 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71777.t1 Aspi01Gene71777 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0021.g015637 No alias not classified & original description: CDS=1-2424 0.1 OrthoFinder output from all 47 species
Ceric.09G038600.1 Ceric.09G038600 not classified & original description: pacid=50586912... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.18 OrthoFinder output from all 47 species
Dac_g39654 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g13828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.18 OrthoFinder output from all 47 species
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
LOC_Os12g29660.1 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species
Lfl_g05640 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_40229g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_956864g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
Ore_g27091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18860 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g09161 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014925 No alias not classified & original description: CDS=1-2424 0.02 OrthoFinder output from all 47 species
Sam_g13644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo107914 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Solyc04g081580.4.1 Solyc04g081580 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Tin_g11999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010143_P002 Zm00001e010143 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Zm00001e034676_P001 Zm00001e034676 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 295 464
IPR001650 Helicase_C 510 615
No external refs found!