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  5. Cre09.g409500

Cre09.g409500


Description : RNA processing.ribonuclease activities.RNase P ribonuclease activities.RNA-dependent RNase P complex.RPP25/POP6 | RPP20/POP7 component


Gene families : OG0000714 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g409500

Target Alias Description ECC score Gene Family Method Actions
Ala_g06907 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Azfi_s0078.g038216 No alias not classified & original description: CDS=139-894 0.02 OrthoFinder output from all 47 species
Cba_g29964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.55 No alias RNA processing.ribonuclease activities.RNase P... 0.01 OrthoFinder output from all 47 species
LOC_Os03g52490.1 LOC_Os03g52490 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.02 OrthoFinder output from all 47 species
LOC_Os09g37006.1 LOC_Os09g37006 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.03 OrthoFinder output from all 47 species
Len_g18463 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Lfl_g23409 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.01 OrthoFinder output from all 47 species
Msp_g24953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09780 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.01 OrthoFinder output from all 47 species
Pir_g59004 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Ppi_g03582 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000438 No alias not classified & original description: CDS=150-998 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0098.g019457 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Smo443692 No alias RNA processing.ribonuclease activities.RNase P... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 26 88
No external refs found!