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  5. Cre09.g402450

Cre09.g402450 (RPT3)


Aliases : RPT3

Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT3 regulatory component


Gene families : OG0002973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g402450
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00161980 RPT3,... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
AT5G58290 RPT3 regulatory particle triple-A ATPase 3 0.05 OrthoFinder output from all 47 species
Adi_g018982 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Als_g27997 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g32958 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aop_g00613 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aop_g02515 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.01G028300.1 RPT3, Ceric.01G028300 regulatory component *(RPT3) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.46 RPT3 26S proteasome regulatory subunit 6B homolog... 0.08 OrthoFinder output from all 47 species
Dcu_g00998 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Dde_g16289 RPT3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os02g21970.1 RPT3, LOC_Os02g21970 regulatory component RPT3 of 26S proteasome 0.13 OrthoFinder output from all 47 species
MA_13350g0010 RPT3 26S proteasome regulatory subunit 6B homolog... 0.02 OrthoFinder output from all 47 species
Mp8g10830.1 RPT3 regulatory component RPT3 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Msp_g01130 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Nbi_g12291 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Pnu_g12682 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ppi_g15414 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011798 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sam_g35578 No alias regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Smo163630 RPT3 Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Smo180600 RPT3 Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Solyc06g082630.4.1 RPT3, Solyc06g082630 regulatory component RPT3 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Solyc06g082660.4.1 RPT3, Solyc06g082660 regulatory component RPT3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Spa_g04802 RPT3 regulatory component *(RPT3) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e014107_P001 RPT3, Zm00001e014107 regulatory component RPT3 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Zm00001e022619_P001 RPT3, Zm00001e022619 regulatory component RPT3 of 26S proteasome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 198 330
IPR032501 Prot_ATP_ID_OB_C 85 140
No external refs found!