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  5. Cre09.g396139

Cre09.g396139 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g396139
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Als_g32607 UPF1, ATUPF1, LBA1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g10496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g077420.3.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
Spa_g48749 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA

No InterPro domains available for this sequence

No external refs found!