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  5. Cre09.g394399

Cre09.g394399 (EMB2777)


Aliases : EMB2777

No description available


Gene families : OG0001866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g394399
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT1G07840 No alias Sas10/Utp3/C1D family 0.09 OrthoFinder output from all 47 species
AT2G43650 EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein 0.1 OrthoFinder output from all 47 species
Adi_g018904 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.04 OrthoFinder output from all 47 species
Aev_g01292 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Aev_g18206 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11404 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Als_g15648 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.01 OrthoFinder output from all 47 species
Aob_g04111 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g12731 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.03 OrthoFinder output from all 47 species
Aop_g07657 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.07 OrthoFinder output from all 47 species
Ceric.01G022400.1 EMB2777, Ceric.01G022400 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Ceric.38G064600.1 Ceric.38G064600 not classified & original description: pacid=50579442... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.45 EMB2777 No description available 0.06 OrthoFinder output from all 47 species
Dac_g11323 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.01 OrthoFinder output from all 47 species
Dcu_g09906 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.05 OrthoFinder output from all 47 species
Dcu_g23543 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g13581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.06 OrthoFinder output from all 47 species
GSVIVT01009200001 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01038137001 EMB2777 No description available 0.12 OrthoFinder output from all 47 species
Gb_25856 EMB2777 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_25857 EMB2777 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os01g01510.1 EMB2777, LOC_Os01g01510 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Len_g47069 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
MA_348135g0010 EMB2777 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_958867g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp4g18120.1 EMB2777 no hits & (original description: none) 0.28 OrthoFinder output from all 47 species
Pnu_g07194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c26_12080V3.1 Pp3c26_12080 Sas10/Utp3/C1D family 0.01 OrthoFinder output from all 47 species
Ppi_g32577 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.01 OrthoFinder output from all 47 species
Sam_g19469 No alias regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Smo405212 EMB2777 No description available 0.13 OrthoFinder output from all 47 species
Solyc04g076560.3.1 Solyc04g076560 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc11g072390.2.1 EMB2777, Solyc11g072390 no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
Spa_g29151 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.04 OrthoFinder output from all 47 species
Tin_g14242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Zm00001e003450_P001 EMB2777, Zm00001e003450 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e028507_P001 Zm00001e028507 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007146 Sas10/Utp3/C1D 272 352
IPR018972 Sas10_C_dom 719 792
No external refs found!