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  5. Cre09.g389912

Cre09.g389912


Description : Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii


Gene families : OG0004990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g389912

Target Alias Description ECC score Gene Family Method Actions
Adi_g013678 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44956 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02313 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01051 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02235 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene42211.t1 Aspi01Gene42211 ubiquitin-binding adaptor *(UFD3) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.31G024400.1 Ceric.31G024400 ubiquitin-binding adaptor *(UFD3) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g03029 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g04414 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031913001 No alias Dynein assembly factor with WDR repeat domains 1... 0.05 OrthoFinder output from all 47 species
LOC_Os07g03160.1 LOC_Os07g03160 ubiquitin-binding adaptor (UFD3) 0.05 OrthoFinder output from all 47 species
Lfl_g11013 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435784g0010 No alias ubiquitin-binding adaptor (UFD3) 0.01 OrthoFinder output from all 47 species
MA_269171g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp8g18780.1 No alias ubiquitin-binding adaptor (UFD3) 0.04 OrthoFinder output from all 47 species
Msp_g36601 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04928 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44526 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51840 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Smo98884 No alias Dynein assembly factor with WDR repeat domains 1... 0.01 OrthoFinder output from all 47 species
Solyc01g109350.3.1 Solyc01g109350 ubiquitin-binding adaptor (UFD3) 0.02 OrthoFinder output from all 47 species
Zm00001e032747_P004 Zm00001e032747 ubiquitin-binding adaptor (UFD3) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR015155 PFU 368 487
IPR013535 PUL_dom 566 848
IPR001680 WD40_repeat 100 139
IPR001680 WD40_repeat 184 220
IPR001680 WD40_repeat 51 94
IPR001680 WD40_repeat 142 178
IPR001680 WD40_repeat 226 266
IPR001680 WD40_repeat 7 40
No external refs found!