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  5. Cre07.g349300

Cre07.g349300 (ISE1, EMB1586)


Aliases : ISE1, EMB1586

Description : DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0006427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g349300
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT1G12770 ISE1, EMB1586 P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Ceric.18G072800.1 ISE1, EMB1586,... not classified & original description: pacid=50621729... 0.01 OrthoFinder output from all 47 species
LOC_Os02g42406.1 ISE1, EMB1586,... DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os03g12000.1 ISE1, EMB1586,... DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
MA_495935g0010 ISE1, EMB1586 DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.01 OrthoFinder output from all 47 species
Mp2g16530.1 ISE1, EMB1586 DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e015207_P001 ISE1, EMB1586,... DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 68 288
IPR001650 Helicase_C 423 521
No external refs found!