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  5. Cre07.g340050

Cre07.g340050


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG2 regulatory GTPase


Gene families : OG0005924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g340050
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Aop_g12078 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0063.g035364 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Ceric.29G055900.1 Ceric.29G055900 regulatory GTPase (NUG2) of LSU processome & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.42 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g17916 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01014369001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Gb_01485 No alias NUG2 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species
LOC_Os03g22890.2 LOC_Os03g22890 NUG2 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Len_g20768 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.01 OrthoFinder output from all 47 species
Lfl_g13104 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Mp2g16460.1 No alias NUG2 LSU processome regulatory GTPase 0.13 OrthoFinder output from all 47 species
Msp_g25675 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Ore_g38488 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Sam_g15343 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.01 OrthoFinder output from all 47 species
Solyc07g063270.3.1 Solyc07g063270 NUG2 LSU processome regulatory GTPase 0.05 OrthoFinder output from all 47 species
Spa_g04616 No alias regulatory GTPase (NUG2) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Zm00001e001677_P001 Zm00001e001677 NUG2 LSU processome regulatory GTPase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012971 NOG2_N_dom 50 180
IPR006073 GTP-bd 320 377
No external refs found!