Cre07.g325716 (ATLIG1, LIG1)


Aliases : ATLIG1, LIG1

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1)


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g325716
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00018040 ATLIG1, LIG1,... DNA damage response.DNA repair mechanisms.base excision... 0.01 OrthoFinder output from all 47 species
AT1G08130 ATLIG1, LIG1 DNA ligase 1 0.05 OrthoFinder output from all 47 species
Adi_g109165 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0068.g036476 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.31 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana 0.11 OrthoFinder output from all 47 species
GSVIVT01031470001 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.02 OrthoFinder output from all 47 species
Mp1g15320.1 ATLIG1, LIG1 DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.04 OrthoFinder output from all 47 species
Ppi_g48452 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.01 OrthoFinder output from all 47 species
Solyc11g066370.2.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.03 OrthoFinder output from all 47 species
Tin_g07751 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Zm00001e004508_P002 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012309 DNA_ligase_ATP-dep_C 824 935
IPR012310 DNA_ligase_ATP-dep_cent 596 799
IPR012308 DNA_ligase_ATP-dep_N 350 525
No external refs found!