Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 4
Gene families : OG0004079 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004079_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aob_g11647 | RPB15.9,... | component *(NRPB4) of RNA polymerase II complex &... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g22312 | RPB15.9,... | component *(NRPB4) of RNA polymerase II complex &... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000241.37 | RPB15.9,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01003467001 | RPB15.9,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g49150.2 | LOC_Os02g49150 | subunit 4 of RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g00085 | RPB15.9,... | component *(NRPB4) of RNA polymerase II complex &... | 0.01 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0235.g026532 | RPB15.9,... | not classified & original description: CDS=531-848 | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006352 | DNA-templated transcription initiation | IEA | Interproscan |
CC | GO:0030880 | RNA polymerase complex | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0042393 | histone binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005574 | Rpb4/RPC9 | 22 | 137 |
No external refs found! |