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  5. Cre06.g293000

Cre06.g293000


Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase alpha complex.POLA3 primase component


Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g293000
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G67320 No alias DNA primase, large subunit family 0.04 OrthoFinder output from all 47 species
Als_g00918 No alias primase component *(POLA3) of DNA polymerase alpha... 0.01 OrthoFinder output from all 47 species
Aop_g06919 No alias primase component *(POLA3) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059810 No alias primase component *(POLA3) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Ceric.22G004000.1 Ceric.22G004000 primase component *(POLA3) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.68 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.11 OrthoFinder output from all 47 species
Dac_g13828 No alias primase component *(POLA3) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Dcu_g14762 No alias primase component *(POLA3) of DNA polymerase alpha... 0.09 OrthoFinder output from all 47 species
GSVIVT01029087001 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder output from all 47 species
Gb_25310 No alias Probable DNA primase large subunit OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Gb_25312 No alias primase component POLA3 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
LOC_Os07g22400.2 LOC_Os07g22400 primase component POLA3 of DNA polymerase alpha complex 0.09 OrthoFinder output from all 47 species
MA_99205g0020 No alias primase component POLA3 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
Mp7g17480.1 No alias primase component POLA3 of DNA polymerase alpha complex 0.11 OrthoFinder output from all 47 species
Msp_g07837 No alias primase component *(POLA3) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Nbi_g10404 No alias primase component *(POLA3) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Pnu_g11539 No alias primase component *(POLA3) of DNA polymerase alpha... 0.01 OrthoFinder output from all 47 species
Ppi_g63485 No alias primase component *(POLA3) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015210 No alias primase component *(POLA3) of DNA polymerase alpha... 0.05 OrthoFinder output from all 47 species
Sam_g38827 No alias primase component *(POLA3) of DNA polymerase alpha... 0.01 OrthoFinder output from all 47 species
Smo88080 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.01 OrthoFinder output from all 47 species
Solyc04g045530.4.1 Solyc04g045530 primase component POLA3 of DNA polymerase alpha complex 0.04 OrthoFinder output from all 47 species
Spa_g08160 No alias primase component *(POLA3) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Tin_g10410 No alias primase component *(POLA3) of DNA polymerase alpha... 0.09 OrthoFinder output from all 47 species
Zm00001e039405_P003 Zm00001e039405 primase component POLA3 of DNA polymerase alpha complex 0.01 OrthoFinder output from all 47 species
Zm00001e040751_P005 Zm00001e040751 primase component POLA3 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEA Interproscan
BP GO:0006269 DNA replication, synthesis of RNA primer IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR007238 DNA_primase_lsu_euk/arc 235 503
No external refs found!