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  5. Cre06.g278097

Cre06.g278097


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.RAE1 scaffold nucleoporin


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g278097
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Als_g11784 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.01 OrthoFinder output from all 47 species
Aop_g00534 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Ceric.10G026000.1 Ceric.10G026000 scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
Ceric.33G060300.1 Ceric.33G060300 scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
LOC_Os08g07960.1 LOC_Os08g07960 RAE1 scaffold nucleoporin of nuclear pore complex 0.01 OrthoFinder output from all 47 species
Len_g08230 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Mp5g18210.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Nbi_g11281 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.01 OrthoFinder output from all 47 species
Sam_g09907 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Solyc10g047000.2.1 Solyc10g047000 RAE1 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Spa_g00711 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.01 OrthoFinder output from all 47 species
Zm00001e020379_P001 Zm00001e020379 RAE1 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Zm00001e039887_P001 Zm00001e039887 RAE1 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 232 271
IPR024977 Apc4_WD40_dom 32 120
No external refs found!