1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre06.g277050

Cre06.g277050


No description available


Gene families : OG0004660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004660_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g277050
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00137580 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00049p00137690 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G13160 No alias ARM repeat superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g053627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G033500.1 Ceric.37G033500 not classified & original description: pacid=50616272... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.36 No alias No description available 0.12 OrthoFinder output from all 47 species
Dcu_g12020 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01000585001 No alias No description available 0.19 OrthoFinder output from all 47 species
Gb_20290 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g53770.1 LOC_Os04g53770 no hits & (original description: none) 0.23 OrthoFinder output from all 47 species
Len_g13280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g34886 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_1537g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_29597g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ppi_g52293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012514 No alias not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Sam_g22766 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo113277 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc12g099890.2.1 Solyc12g099890 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e006853_P001 Zm00001e006853 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012977 SDA1_N 56 105
IPR007949 SDA1_C 417 604
IPR007949 SDA1_C 622 882
No external refs found!