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  5. Cre06.g266416

Cre06.g266416


Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g266416

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00025p00230510 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g057149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0024.g020323 No alias not classified & original description: CDS=58-3480 0.02 OrthoFinder output from all 47 species
Ceric.1Z227800.1 Ceric.1Z227800 not classified & original description: pacid=50639140... 0.02 OrthoFinder output from all 47 species
Ceric.1Z321000.1 Ceric.1Z321000 not classified & original description: pacid=50597147... 0.03 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.02 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.02 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os03g53760.1 LOC_Os03g53760 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os10g33275.1 LOC_Os10g33275 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g19148 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.02 OrthoFinder output from all 47 species
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Ore_g10298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc04g007510.4.1 Solyc04g007510 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.02 OrthoFinder output from all 47 species
Tin_g02164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 559 648
IPR001650 Helicase_C 280 417
IPR011709 DEAD-box_helicase_OB_fold 756 846
No external refs found!