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  5. Cre06.g254150

Cre06.g254150 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.PWP2/UTP1 assembly factor


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g254150
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00059990 PWP2, ATPWP2,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
AT1G15440 PWP2, ATPWP2 periodic tryptophan protein 2 0.23 OrthoFinder output from all 47 species
Adi_g022769 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.01 OrthoFinder output from all 47 species
Aev_g07968 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.01 OrthoFinder output from all 47 species
Ala_g02565 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Als_g14188 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
Aop_g09640 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0152.g053425 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Ceric.39G059700.1 PWP2, ATPWP2,... SSU processome assembly factor *(UTP1/PWP2) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.89 No alias Periodic tryptophan protein 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dcu_g01964 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g10263 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01017243001 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder output from all 47 species
Gb_23048 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.07 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.17 OrthoFinder output from all 47 species
Lfl_g05701 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
MA_138254g0010 PWP2, ATPWP2 Periodic tryptophan protein 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_188621g0010 PWP2, ATPWP2 Periodic tryptophan protein 2 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp1g17900.1 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.27 OrthoFinder output from all 47 species
Ore_g29636 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species
Pp3c7_9990V3.1 PWP2, ATPWP2, Pp3c7_9990 periodic tryptophan protein 2 0.02 OrthoFinder output from all 47 species
Smo80929 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc03g120080.4.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.14 OrthoFinder output from all 47 species
Spa_g18868 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 372 408
IPR001680 WD40_repeat 134 167
IPR001680 WD40_repeat 542 579
IPR001680 WD40_repeat 457 493
IPR001680 WD40_repeat 420 450
IPR001680 WD40_repeat 596 625
IPR007148 SSU_processome_Utp12 831 960
No external refs found!