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  5. Cre04.g215350

Cre04.g215350


No description available


Gene families : OG0005210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g215350
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G18900 No alias Transducin/WD40 repeat-like superfamily protein 0.24 OrthoFinder output from all 47 species
Adi_g085575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07577 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene49455.t1 Aspi01Gene49455 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49457.t1 Aspi01Gene49457 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0026.g023316 No alias not classified & original description: CDS=130-2748 0.11 OrthoFinder output from all 47 species
Ceric.03G099700.1 Ceric.03G099700 not classified & original description: pacid=50571866... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.131 No alias No description available 0.08 OrthoFinder output from all 47 species
Dcu_g38097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14899 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01030738001 No alias No description available 0.13 OrthoFinder output from all 47 species
LOC_Os12g41620.1 LOC_Os12g41620 no hits & (original description: none) 0.2 OrthoFinder output from all 47 species
Len_g01894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428181g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_40164g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_5080g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_9860436g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g09630.1 No alias no hits & (original description: none) 0.26 OrthoFinder output from all 47 species
Ore_g05181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13764 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g27142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo166499 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc07g066410.4.1 Solyc07g066410 no hits & (original description: none) 0.21 OrthoFinder output from all 47 species
Spa_g25780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003211_P001 Zm00001e003211 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 229 263
IPR001680 WD40_repeat 38 76
No external refs found!