Cre03.g194800 (CLPS3)

Aliases : CLPS3

Description : RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Clp1 component

Gene families : OG0003520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003520_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre03.g194800
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AT3G04680	CLPS3	CLP-similar protein 3	0.02	OrthoFinder output from all 47 species
Azfi_s0125.g048588	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Ceric.38G063700.1	CLPS3, Ceric.38G063700	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.03	OrthoFinder output from all 47 species
Dac_g02159	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Dcu_g03837	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.01	OrthoFinder output from all 47 species
LOC_Os02g12570.1	CLPS3, LOC_Os02g12570	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.04	OrthoFinder output from all 47 species
Len_g14830	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.02	OrthoFinder output from all 47 species
Mp6g10380.1	CLPS3	component Clp1 of Cleavage Factor II (CF-IIm) complex	0.01	OrthoFinder output from all 47 species
Ore_g01534	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.01	OrthoFinder output from all 47 species
Pir_g09435	CLPS3	component *(Clp1) of Cleavage Factor II (CF-IIm) complex...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032324	Clp1_N	13	103
IPR010655	Clp1_C	319	426
IPR032319	CLP1_P	125	313

External Links

No external refs found!