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  5. Cre03.g172950

Cre03.g172950 (CBF5, AtCBF5, NAP57, AtNAP57)


Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component


Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g172950
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253700 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.01 OrthoFinder output from all 47 species
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.08 OrthoFinder output from all 47 species
Als_g01903 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 OrthoFinder output from all 47 species
Aop_g04269 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 OrthoFinder output from all 47 species
Azfi_s0132.g049274 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.10 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.15 OrthoFinder output from all 47 species
Dac_g22680 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 OrthoFinder output from all 47 species
Dcu_g11724 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Ehy_g09120 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.05 OrthoFinder output from all 47 species
GSVIVT01034188001 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Gb_32372 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.03 OrthoFinder output from all 47 species
Gb_34541 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species
LOC_Os03g25450.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 OrthoFinder output from all 47 species
LOC_Os07g44190.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.03 OrthoFinder output from all 47 species
Lfl_g10584 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
MA_27456g0030 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species
Mp4g12650.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 OrthoFinder output from all 47 species
Ppi_g35999 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Sam_g45756 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo81986 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 OrthoFinder output from all 47 species
Solyc02g081810.4.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 OrthoFinder output from all 47 species
Spa_g05917 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Tin_g32083 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Zm00001e017259_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species
Zm00001e025570_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species
Zm00001e035655_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR012960 Dyskerin-like 49 106
IPR032819 TruB_C 228 296
IPR002501 PsdUridine_synth_N 110 227
IPR002478 PUA 300 373
No external refs found!