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  5. Cre02.g141000

Cre02.g141000 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g141000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00252700 ATRTL2, RTL2,... RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III... 0.02 OrthoFinder output from all 47 species
Adi_g022447 DCL1, CAF,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
Ala_g18302 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
Cba_g01355 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Ceric.22G046500.1 DCL1, CAF,... endoribonuclease *(DCL3) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g12567 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Gb_34257 DCL4, ATDCL4 Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Gb_34767 ATDCL3, DCL3 endoribonuclease (DCL3). endoribonuclease (DCL4) 0.01 OrthoFinder output from all 47 species
LOC_Os03g02970.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
MA_10432726g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
MA_10436812g0020 DCL4, ATDCL4 Dicer-like protein 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10437243g0010 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species
MA_10437243g0020 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_118446g0010 ATDCL3, DCL3 Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Ore_g37606 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
Ppi_g18634 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Solyc11g008540.3.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e012492_P003 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 699 807
IPR011545 DEAD/DEAH_box_helicase_dom 10 174
IPR000999 RNase_III_dom 1888 2095
IPR000999 RNase_III_dom 1594 1698
IPR005034 Dicer_dimerisation_dom 895 987
No external refs found!