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  5. Cre02.g088800

Cre02.g088800


No description available


Gene families : OG0004343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g088800

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0048.g030633 No alias not classified & original description: CDS=160-1254 0.02 OrthoFinder output from all 47 species
Ceric.14G061300.1 Ceric.14G061300 not classified & original description: pacid=50634060... 0.03 OrthoFinder output from all 47 species
LOC_Os08g45240.2 LOC_Os08g45240 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g10140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp8g18410.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g18514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016985 No alias not classified & original description: CDS=106-1140 0.02 OrthoFinder output from all 47 species
Spa_g31774 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g43550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37848 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e010702_P001 Zm00001e010702 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 202 271
No external refs found!