Aliases : EMB2762
Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOC4 assembly factor
Gene families : OG0004927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004927_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre01.g068377 | |
Cluster | HCCA: Cluster_53 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00044p00141100 | EMB2762,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.01 | OrthoFinder output from all 47 species | |
AT2G17250 | EMB2762 | CCAAT-binding factor | 0.05 | OrthoFinder output from all 47 species | |
Aev_g08693 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.01 | OrthoFinder output from all 47 species | |
Ala_g02072 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g14342 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0079.g038429 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.14G034900.1 | EMB2762, Ceric.14G034900 | SSU processome assembly factor *(NOC4) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000553.49 | EMB2762 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.06 | OrthoFinder output from all 47 species | |
Dac_g18421 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g03035 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.06 | OrthoFinder output from all 47 species | |
Dde_g25462 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01004114001 | EMB2762 | No description available | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g49580.1 | EMB2762, LOC_Os04g49580 | SSU processome assembly factor (NOC4) | 0.09 | OrthoFinder output from all 47 species | |
Lfl_g06636 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.02 | OrthoFinder output from all 47 species | |
MA_10433722g0010 | EMB2762 | SSU processome assembly factor (NOC4) | 0.03 | OrthoFinder output from all 47 species | |
MA_9224196g0010 | No alias | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
Mp1g06620.1 | EMB2762 | SSU processome assembly factor (NOC4) | 0.18 | OrthoFinder output from all 47 species | |
Ore_g27976 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0033.g011083 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g49646 | No alias | SSU processome assembly factor *(NOC4) & original... | 0.03 | OrthoFinder output from all 47 species | |
Smo446968 | EMB2762 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.02 | OrthoFinder output from all 47 species | |
Solyc10g074560.2.1 | EMB2762, Solyc10g074560 | SSU processome assembly factor (NOC4) | 0.1 | OrthoFinder output from all 47 species | |
Spa_g04301 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.01 | OrthoFinder output from all 47 species | |
Tin_g19274 | EMB2762 | SSU processome assembly factor *(NOC4) & original... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e041386_P001 | EMB2762, Zm00001e041386 | SSU processome assembly factor (NOC4) | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005612 | CCAAT-binding_factor | 426 | 592 |
No external refs found! |