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  5. Cre01.g063267

Cre01.g063267


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.ENP1 assembly factor


Gene families : OG0005927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g063267
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00173000 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
AT1G31660 No alias CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);... 0.04 OrthoFinder output from all 47 species
Aev_g27334 No alias SSU processome assembly factor *(ENP1) & original... 0.04 OrthoFinder output from all 47 species
Aop_g02538 No alias SSU processome assembly factor *(ENP1) & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0004.g008836 No alias SSU processome assembly factor *(ENP1) & original... 0.05 OrthoFinder output from all 47 species
Ceric.26G044500.1 Ceric.26G044500 SSU processome assembly factor *(ENP1) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000829.16 No alias Vesicle trafficking.SNARE target membrane recognition... 0.05 OrthoFinder output from all 47 species
Dcu_g38822 No alias SSU processome assembly factor *(ENP1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01011050001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os09g18320.1 LOC_Os09g18320 SSU processome assembly factor (ENP1) 0.02 OrthoFinder output from all 47 species
Lfl_g01444 No alias SSU processome assembly factor *(ENP1) & original... 0.01 OrthoFinder output from all 47 species
MA_136916g0010 No alias SSU processome assembly factor (ENP1) 0.01 OrthoFinder output from all 47 species
MA_170011g0010 No alias SSU processome assembly factor (ENP1) 0.01 OrthoFinder output from all 47 species
Mp5g10140.1 No alias SSU processome assembly factor (ENP1) 0.21 OrthoFinder output from all 47 species
Ppi_g04576 No alias SSU processome assembly factor *(ENP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g49538 No alias SSU processome assembly factor *(ENP1) & original... 0.05 OrthoFinder output from all 47 species
Smo270362 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Solyc07g056550.3.1 Solyc07g056550 SSU processome assembly factor (ENP1) 0.11 OrthoFinder output from all 47 species
Zm00001e006514_P004 Zm00001e006514 SSU processome assembly factor (ENP1) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007955 Bystin 180 473
No external refs found!