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  5. Cre01.g046237

Cre01.g046237


Description : Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana


Gene families : OG0003006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g046237
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.02 OrthoFinder output from all 47 species
Adi_g073167 EDA16 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g10693 No alias chromatin remodeling factor *(Ris1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02925 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.28G036100.1 Ceric.28G036100 chromatin remodeling factor *(Ris1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
LOC_Os08g08220.1 LOC_Os08g08220 chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Mp8g05230.1 No alias chromatin remodeling factor (Ris1) 0.02 OrthoFinder output from all 47 species
Pir_g17386 No alias chromatin remodeling factor *(Ris1) & original description: none 0.01 OrthoFinder output from all 47 species
Smo429547 No alias Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Tin_g27460 EDA16 chromaTin remodeling factor *(Ris1) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e021657_P003 Zm00001e021657 chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 2106 2203
IPR000330 SNF2_N 1018 1861
IPR018957 Znf_C3HC4_RING-type 1913 1956
No external refs found!