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  5. Cre01.g042900

Cre01.g042900


Description : RNA processing.RNA modification.rRNA/tRNA methylation.DIM1A-type rRNA adenosine dimethylase


Gene families : OG0002989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g042900
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Ala_g14002 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62911.t1 Aspi01Gene62911 rRNA adenosine dimethylase *(DIM1A) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037207 No alias rRNA adenosine dimethylase *(DIM1A) & original... 0.02 OrthoFinder output from all 47 species
Ceric.17G049900.1 Ceric.17G049900 rRNA adenosine dimethylase *(DIM1A) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01028116001 No alias Ribosomal RNA small subunit methyltransferase... 0.02 OrthoFinder output from all 47 species
Gb_34275 No alias rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species
LOC_Os10g10434.1 LOC_Os10g10434 rRNA adenosine dimethylase (DIM1A) 0.05 OrthoFinder output from all 47 species
MA_10429808g0010 No alias Ribosomal RNA small subunit methyltransferase... 0.02 OrthoFinder output from all 47 species
Mp6g10100.1 No alias rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species
Sam_g16982 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013790_P001 Zm00001e013790 rRNA adenosine dimethylase (DIM1A) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001737 KsgA/Erm 40 263
No external refs found!