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Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOB1 endonuclease
Gene families : OG0006353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006353_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre01.g031750 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00110p00064100 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.09 | OrthoFinder output from all 47 species | |
| AT5G41190 | No alias | CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)... | 0.13 | OrthoFinder output from all 47 species | |
| Als_g00927 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0501.g073867 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G032400.1 | Ceric.01G032400 | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.05 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020964.11 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03866 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01019776001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.13 | OrthoFinder output from all 47 species | |
| Gb_33378 | No alias | NOB1 pre-rRNA processing endonuclease involved in ITS1... | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os02g02360.1 | LOC_Os02g02360 | NOB1 pre-rRNA processing endonuclease involved in ITS1... | 0.11 | OrthoFinder output from all 47 species | |
| MA_101933g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g16460.1 | No alias | NOB1 pre-rRNA processing endonuclease involved in ITS1... | 0.17 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0180.g024790 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g19264 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g19265 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.01 | OrthoFinder output from all 47 species | |
| Solyc08g007990.3.1 | Solyc08g007990 | NOB1 pre-rRNA processing endonuclease involved in ITS1... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013450_P001 | Zm00001e013450 | NOB1 pre-rRNA processing endonuclease involved in ITS1... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025376_P003 | Zm00001e025376 | NOB1 pre-rRNA processing endonuclease involved in ITS1... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| CC | GO:0005730 | nucleolus | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
| MF | GO:0030515 | snoRNA binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |