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  5. GSVIVT01038263001

GSVIVT01038263001 (ATRAP, RAP)


Aliases : ATRAP, RAP

Description : RAP domain-containing protein, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0002819 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002819_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01038263001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00101500 ATRAP, RAP,... RAP domain-containing protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
AT2G31890 ATRAP, RAP RAP 0.1 OrthoFinder output from all 47 species
Adi_g008836 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02427 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08359 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0112.g045803 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original... 0.04 OrthoFinder output from all 47 species
Cba_g14001 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G056200.1 ATRAP, RAP,... 16S-rRNA maturation factor *(RAP) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000385.16 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g389541 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_29061 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
LOC_Os03g31150.3 ATRAP, RAP,... RAP domain-containing protein, chloroplastic OS=Oryza... 0.08 OrthoFinder output from all 47 species
MA_8868156g0010 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.07 OrthoFinder output from all 47 species
Mp2g23920.1 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
Mp2g23930.1 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
Msp_g14275 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17991 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28364 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008762 ATRAP, RAP 16S-rRNA maturation factor *(RAP) & original... 0.05 OrthoFinder output from all 47 species
Smo412574 ATRAP, RAP RAP domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Smo413123 ATRAP, RAP RAP domain-containing protein, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species
Solyc12g017510.2.1 ATRAP, RAP,... RAP domain-containing protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
Zm00001e016550_P002 ATRAP, RAP,... RAP domain-containing protein, chloroplastic OS=Oryza... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
InterPro domains Description Start Stop
IPR013584 RAP 366 422
No external refs found!