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  5. GSVIVT01037825001

GSVIVT01037825001


No description available


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037825001
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00056140 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.04 OrthoFinder output from all 47 species
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G33810 No alias Glycosyl hydrolase superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G33820 No alias Glycosyl hydrolase superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33840 No alias Glycosyl hydrolase family 10 protein 0.06 OrthoFinder output from all 47 species
Adi_g007681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g073081 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17062 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g25716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007415 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: CDS=41-2794 0.03 OrthoFinder output from all 47 species
Azfi_s0207.g057923 No alias not classified & original description: CDS=1-1875 0.03 OrthoFinder output from all 47 species
Ceric.30G036100.1 Ceric.30G036100 not classified & original description: pacid=50608372... 0.04 OrthoFinder output from all 47 species
Dde_g37891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.06 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.05 OrthoFinder output from all 47 species
LOC_Os01g04300.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.08 OrthoFinder output from all 47 species
LOC_Os03g10440.1 LOC_Os03g10440 no description available(sp|a0a1p8b8f8|xyn5_arath : 380.0) 0.04 OrthoFinder output from all 47 species
LOC_Os03g10478.1 LOC_Os03g10478 no description available(sp|q84wt5|xyn5l_arath : 394.0) 0.03 OrthoFinder output from all 47 species
LOC_Os03g14010.1 LOC_Os03g14010 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.03 OrthoFinder output from all 47 species
LOC_Os05g23924.1 LOC_Os05g23924 no description available(sp|q84wt5|xyn5l_arath : 299.0) 0.05 OrthoFinder output from all 47 species
LOC_Os05g25560.1 LOC_Os05g25560 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os07g27320.1 LOC_Os07g27320 endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
LOC_Os10g21100.1 LOC_Os10g21100 no description available(sp|a0a1p8b8f8|xyn5_arath : 358.0) 0.03 OrthoFinder output from all 47 species
LOC_Os10g21110.1 LOC_Os10g21110 no description available(sp|q680b7|xyn4_arath : 358.0) 0.06 OrthoFinder output from all 47 species
Len_g07345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_185000g0010 ATXYN1, RXF12 no description available(sp|o80596|xyn2_arath : 81.6) 0.03 OrthoFinder output from all 47 species
Nbi_g11652 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc01g105500.4.1 Solyc01g105500 no description available(sp|a0a1p8b8f8|xyn5_arath : 393.0) 0.03 OrthoFinder output from all 47 species
Solyc01g106990.2.1 Solyc01g106990 no description available(sp|q84wt5|xyn5l_arath : 338.0) 0.04 OrthoFinder output from all 47 species
Solyc05g051260.3.1 Solyc05g051260 no description available(sp|q84wt5|xyn5l_arath : 344.0) 0.06 OrthoFinder output from all 47 species
Solyc10g055370.2.1 Solyc10g055370 no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0) 0.06 OrthoFinder output from all 47 species
Tin_g01223 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001013_P003 Zm00001e001013 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.06 OrthoFinder output from all 47 species
Zm00001e002760_P001 Zm00001e002760 no description available(sp|q680b7|xyn4_arath : 360.0) 0.03 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.06 OrthoFinder output from all 47 species
Zm00001e016997_P001 Zm00001e016997 endo-beta-1,4-xylanase 0.05 OrthoFinder output from all 47 species
Zm00001e038772_P001 Zm00001e038772 no description available(sp|q84wt5|xyn5l_arath : 392.0) 0.04 OrthoFinder output from all 47 species
Zm00001e038773_P006 Zm00001e038773 no description available(sp|q84wt5|xyn5l_arath : 388.0) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 198 447
IPR003305 CenC_carb-bd 23 139
No external refs found!