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  5. GSVIVT01037782001

GSVIVT01037782001


Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037782001

Target Alias Description ECC score Gene Family Method Actions
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.04 OrthoFinder output from all 47 species
Adi_g025310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g125875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42686 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04338.t2 Aspi01Gene04338 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037780 No alias not classified & original description: CDS=1-1272 0.03 OrthoFinder output from all 47 species
Cba_g31898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.33G066600.1 Ceric.33G066600 not classified & original description: pacid=50607344... 0.03 OrthoFinder output from all 47 species
Dcu_g19340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Lfl_g23635 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426583g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Ore_g17242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010074 No alias not classified & original description: CDS=287-2170 0.04 OrthoFinder output from all 47 species
Spa_g27908 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g05643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025605 OST-HTH/LOTUS_dom 209 287
IPR000504 RRM_dom 325 370
IPR000571 Znf_CCCH 163 184
No external refs found!