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  5. GSVIVT01036944001

GSVIVT01036944001 (MED34, ATRECQ2, RECQL2)


Aliases : MED34, ATRECQ2, RECQL2

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED34 component


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01036944001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00083990 RECQI1,... ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aop_g11868 RECQI1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06356 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os02g54020.1 RecQl3, ATRECQ3,... ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g14718 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Ppi_g41947 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Sam_g49278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g074600.4.1 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Zm00001e016051_P001 RecQl3, ATRECQ3,... ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 92 260
IPR032284 RecQ_Zn-bd 420 476
IPR002121 HRDC_dom 606 666
IPR001650 Helicase_C 308 407
No external refs found!