GSVIVT01036887001

Description : Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4E large epsilon subunit

Gene families : OG0004559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004559_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036887001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00117p00120670	evm_27.TU.AmTr_v1...	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.04	OrthoFinder output from all 47 species
AT1G31730	No alias	Adaptin family protein	0.05	OrthoFinder output from all 47 species
Aev_g02590	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.1	OrthoFinder output from all 47 species
Ala_g06245	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.1	OrthoFinder output from all 47 species
Als_g22306	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.03	OrthoFinder output from all 47 species
Aob_g03588	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.1	OrthoFinder output from all 47 species
Aspi01Gene71337.t1	Aspi01Gene71337	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.03	OrthoFinder output from all 47 species
Azfi_s0048.g030676	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.07	OrthoFinder output from all 47 species
Cba_g13848	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.05	OrthoFinder output from all 47 species
Ceric.09G002800.1	Ceric.09G002800	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.14	OrthoFinder output from all 47 species
Cre06.g310000	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.07	OrthoFinder output from all 47 species
Dcu_g01987	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.12	OrthoFinder output from all 47 species
Dde_g28708	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.04	OrthoFinder output from all 47 species
LOC_Os01g68750.1	LOC_Os01g68750	large subunit epsilon of AP-4 vacuole cargo adaptor complex	0.13	OrthoFinder output from all 47 species
Lfl_g03471	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.12	OrthoFinder output from all 47 species
MA_10436474g0010	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor complex	0.1	OrthoFinder output from all 47 species
MA_173844g0010	No alias	AP-4 complex subunit epsilon OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_218198g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_41176g0010	No alias	AP-4 complex subunit epsilon OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Nbi_g01469	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.06	OrthoFinder output from all 47 species
Pir_g01682	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.03	OrthoFinder output from all 47 species
Ppi_g03985	No alias	large subunit epsilon of AP-4 vacuole cargo adaptor...	0.03	OrthoFinder output from all 47 species
Smo170737	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.07	OrthoFinder output from all 47 species
Solyc08g075310.4.1	Solyc08g075310	large subunit epsilon of AP-4 vacuole cargo adaptor complex	0.17	OrthoFinder output from all 47 species
Zm00001e018853_P002	Zm00001e018853	large subunit epsilon of AP-4 vacuole cargo adaptor complex	0.1	OrthoFinder output from all 47 species
Zm00001e028486_P002	Zm00001e028486	large subunit epsilon of AP-4 vacuole cargo adaptor complex	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	46	581

External Links

No external refs found!

GSVIVT01036887001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation