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Description : U-box domain-containing protein 4 OS=Arabidopsis thaliana
Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00007p00217990 | evm_27.TU.AmTr_v1... | U-box domain-containing protein 16 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00072p00171260 | PUB14, ATPUB14,... | Protein degradation.peptide tagging.Ubiquitin... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00086p00031680 | evm_27.TU.AmTr_v1... | U-box domain-containing protein 4 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| AT1G10560 | PUB18, ATPUB18 | plant U-box 18 | 0.03 | OrthoFinder output from all 47 species | |
| AT1G60190 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G46510 | PUB13, ATPUB13 | plant U-box 13 | 0.04 | OrthoFinder output from all 47 species | |
| AT5G01830 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G58680 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g009233 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g009234 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g017517 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g019046 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g026489 | No alias | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g054040 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g080188 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g089259 | PUB14, ATPUB14 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g102535 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g03944 | PUB12, AtPUB12 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g05159 | PUB12, AtPUB12 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g09883 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06664 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g03799 | ATPUB17, PUB17 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g07222 | PUB8, B80 | E3 ubiquitin ligase *(PUB8) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g09506 | PUB13, ATPUB13 | E3 ubiquitin ligase *(PUB8) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g16594 | PUB14, ATPUB14 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g01685 | PUB8, B80 | E3 ubiquitin ligase *(PUB8) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g17483 | PUB15 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g19238 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g00484 | PUB8, B80 | E3 ubiquitin ligase *(PUB8) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g04849 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g19192 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g21703 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene01377.t1 | PUB14, ATPUB14,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene43158.t1 | ATPUB17, PUB17,... | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene44181.t1 | ATPUB17, PUB17,... | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene44183.t1 | ATPUB17, PUB17,... | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene44184.t1 | ATPUB17, PUB17,... | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene44185.t1 | ATPUB17, PUB17,... | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene65975.t1 | PUB8, B80,... | E3 ubiquitin ligase *(PUB8) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene69641.t1 | PUB13, ATPUB13,... | E3 ubiquitin ligase *(PUB8) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0102.g044585 | ATPUB17, PUB17 | not classified & original description: CDS=188-889 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0110.g045492 | ATPUB17, PUB17 | not classified & original description: CDS=1-2295 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g31838 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g43903 | No alias | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.08G025000.1 | Ceric.08G025000 | not classified & original description: pacid=50638405... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.13G093000.1 | ATPUB17, PUB17,... | not classified & original description: pacid=50635700... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.34G042900.1 | PUB13, ATPUB13,... | not classified & original description: pacid=50623547... | 0.06 | OrthoFinder output from all 47 species | |
| Cre03.g178550 | No alias | Dynein assembly factor with WDR repeat domains 1... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g01449 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g08066 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g32706 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g45484 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g26575 | No alias | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g02800 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g06164 | ATPUB17, PUB17 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g06975 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g11164 | PUB12, AtPUB12 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g13215 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g22153 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01020229001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_08792 | ATPUB17, PUB17 | U-box domain-containing protein 1 OS=Medicago truncatula... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_10627 | PUB8, B80 | U-box domain-containing protein 13 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_29276 | ATPUB17, PUB17 | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g60860.1 | LOC_Os01g60860 | U-box domain-containing protein 16 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g04470.1 | PUB8, B80, LOC_Os08g04470 | U-box domain-containing protein 8 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g32060.1 | LOC_Os08g32060 | E3 ubiquitin ligase (PUB) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os10g08790.1 | LOC_Os10g08790 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g08149 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g08985 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g20959 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g08019 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g30685 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_365628g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_9917294g0010 | ATPUB17, PUB17 | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g01206 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g37725 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g05165 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g32554 | PUB12, AtPUB12 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g00381 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g12544 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g38766 | No alias | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g01319 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g02760 | PUB8, B80 | E3 ubiquitin ligase *(PUB8) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g07479 | No alias | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g01237 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g11362 | PUB13, ATPUB13 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g30958 | PUB13, ATPUB13 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0011.g005097 | No alias | not classified & original description: CDS=1-2154 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39035 | No alias | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo420513 | No alias | U-box domain-containing protein 4 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Smo73073 | PUB39 | U-box domain-containing protein 8 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Smo75609 | ATPUB17, PUB17 | U-box domain-containing protein 1 OS=Medicago truncatula | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g096460.2.1 | Solyc01g096460 | U-box domain-containing protein 4 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g072080.1.1 | ATPUB17, PUB17,... | U-box domain-containing protein 17 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g114160.1.1 | Solyc03g114160 | E3 ubiquitin ligase (PUB) | 0.06 | OrthoFinder output from all 47 species | |
| Solyc04g077850.3.1 | Solyc04g077850 | U-box domain-containing protein 4 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g018230.1.1 | Solyc09g018230 | U-box domain-containing protein 16 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g088360.2.1 | Solyc12g088360 | U-box domain-containing protein 4 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g05552 | ATPUB17, PUB17 | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g07392 | PUB15 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g08558 | ATPUB17, PUB17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g25117 | PUB14, ATPUB14 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g01104 | No alias | E3 ubiquiTin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g02458 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g10003 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e014377_P001 | ATPUB17, PUB17,... | U-box domain-containing protein 4 OS=Oryza sativa subsp.... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014566_P002 | PUB9, ATPUB9,... | E3 ubiquitin ligase (PUB) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e018578_P001 | Zm00001e018578 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e019429_P001 | Zm00001e019429 | U-box domain-containing protein 16 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e028839_P001 | Zm00001e028839 | U-box domain-containing protein 16 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e031915_P001 | Zm00001e031915 | U-box domain-containing protein 16 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e034012_P001 | Zm00001e034012 | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036734_P001 | PUB14, ATPUB14,... | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0042545 | cell wall modification | IEP | HCCA |
| BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071555 | cell wall organization | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |