GSVIVT01036518001

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP)

Gene families : OG0002420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002420_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036518001
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AT1G68990	MGP3	male gametophyte defective 3	0.05	OrthoFinder output from all 47 species
AT5G15700	No alias	DNA/RNA polymerases superfamily protein	0.11	OrthoFinder output from all 47 species
Aev_g06151	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.02	OrthoFinder output from all 47 species
Ala_g02658	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Als_g05752	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.02	OrthoFinder output from all 47 species
Als_g62343	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Aob_g14601	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene57348.t1	MGP3, Aspi01Gene57348	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.04	OrthoFinder output from all 47 species
Cba_g37255	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Ceric.05G056000.1	Ceric.05G056000	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021493.49	PDE319, SCA3	RNA biosynthesis.organelle machineries.RNA polymerase...	0.04	OrthoFinder output from all 47 species
Dac_g06640	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.05	OrthoFinder output from all 47 species
Dde_g12005	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.02	OrthoFinder output from all 47 species
Gb_02899	MGP3	nuclear-encoded organellar RNA polymerase (NEP)	0.05	OrthoFinder output from all 47 species
LOC_Os09g07120.1	LOC_Os09g07120	nuclear-encoded organellar RNA polymerase (NEP)	0.09	OrthoFinder output from all 47 species
Lfl_g35363	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Mp3g02090.1	No alias	nuclear-encoded organellar RNA polymerase (NEP)	0.06	OrthoFinder output from all 47 species
Msp_g14542	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Ore_g19690	MGP3	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.02	OrthoFinder output from all 47 species
Ore_g43034	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc05g010660.4.1	MGP3, Solyc05g010660	nuclear-encoded organellar RNA polymerase (NEP)	0.08	OrthoFinder output from all 47 species
Spa_g10286	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.07	OrthoFinder output from all 47 species
Tin_g26905	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Zm00001e035572_P001	MGP3, Zm00001e035572	nuclear-encoded organellar RNA polymerase (NEP)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029262	RPOL_N	200	521
IPR002092	DNA-dir_Rpol_phage-type	644	1035

External Links

No external refs found!

GSVIVT01036518001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation