- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : TCP1
Description : RNA biosynthesis.transcriptional activation.TCP transcription factor
Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00021p00158020 | TCP4, MEE35,... | RNA biosynthesis.transcriptional activation.TCP... | 0.04 | OrthoFinder output from all 47 species | |
| AT5G60970 | TCP5 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g07892 | TCP3 | TCP-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g28173 | TCP2 | TCP-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene27741.t1 | TCP2, Aspi01Gene27741 | TCP-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g37950 | TCP13, TFPD, PTF1 | TCP-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.37G069500.1 | TCP2, Ceric.37G069500 | TCP-type transcription factor & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01008109001 | TCP5 | RNA biosynthesis.transcriptional activation.TCP... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_38379 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g24480.1 | BRC1, ATTCP18,... | transcription factor (TCP) | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g26630 | TCP2 | TCP-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g26727 | TCP13, TFPD, PTF1 | TCP-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g016414.1.1 | TCP10, Solyc01g016414 | transcription factor (TCP) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g077250.2.1 | TCP4, MEE35,... | transcription factor (TCP) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g089020.2.1 | TCP13, TFPD,... | transcription factor (TCP) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e005407_P001 | TCP12, BRC2,... | transcription factor (TCP) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e009811_P001 | BRC1, ATTCP18,... | transcription factor (TCP) | 0.1 | OrthoFinder output from all 47 species | |
| Zm00001e011516_P001 | TCP2, Zm00001e011516 | transcription factor (TCP) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e032122_P001 | TCP5, Zm00001e032122 | transcription factor (TCP) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e032821_P001 | TCP2, Zm00001e032821 | transcription factor (TCP) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e034097_P001 | BRC1, ATTCP18,... | transcription factor (TCP) | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR017887 | TF_TCP_subgr | 70 | 159 |
| No external refs found! |